The temptation of power versus control is the biggest "controversy" that the whole Geneforge series was based on, just above individual rights and scientific development.
You can edit some of your preferencess in your options menu (shortkeys, mostly). But yeah, it does take some getting used too. Mosst new players to Geneforge also find stealth very hard in this game until they've gotten used to the game engine.
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Is Under the Dome any good? When I saw it at the bookstore, I couldn't help but think: didn't the Simpsons do that already?
I'm about halfway into it. So far, it's excellent. Barbie FTW.